Iain Melvin, Jason Weston, Christina Leslie, and William Stafford Noble
RANKPROP: a web server for protein remote homology detection
 William Stafford Noble, Rui Kuang, Christina Leslie and Jason Weston Identifying remote protein homologs by network propagation FEBS Journal, Volume 272 Issue 20 Page 5119, October, 2005
 J. Weston, A. Eliseeff, D. Zhou, C. Leslie and W. Stafford Noble Protein ranking: from local to global structure in the protein similarity network Proceedings of the National Academy of Science. 101(17):6559-6563, 2004
 Jason Weston, Rui Kuang, Christina Leslie and William Stafford Noble Protein Ranking by Semi-Supervised Network Propagation BMC Bioinformatics, 2004
A snapshot of the web server source is available
Source for the experiments is available here.
The current Torch5 implementation of the Rankprop algorithm can be found here.
The website requires the source for the experiments to be installed along with supporting software such as Torch5 (The Machine Learning toolbox).
This web server was supported by National Institute of Health grant GM74257.
This work was also funded in part by award EIA-0312706 from the National Science Foundation.
Jason Weston and Iain Melvin also thank NEC Laboratories America, Princeton, where they work, for their support of this project.
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